Identification and Bioinformatic Analysis of CAMTA Genes in Olive (Olea europaea L.)


Özbilen A.

International Journal of Innovative Approaches in Science Research , cilt.6, sa.2, ss.64-78, 2022 (Hakemli Dergi)

Özet

Calcium is a secondary messenger which involves in stress response, adaptation, development and signaling pathways in plants.
In cells, calcium is captured by calmodulin and after a conformation change, calmodulin
becomes able to target calmodulin binding
transcription factors. The calmodulin
-binding transcriptional activators (CAMTAs) are one of these calmodulin binding transcription
factors and they have CG
-1, TIG, ANK, CaMBD and IQ conserved domains. CAMTAs are studied well in lots of plant species, and
they are found to be involved in stress responses like drought, cold, salt and hormone responses like ethylene, abscisic acid
, auxin,
and gibberellin. In this study, CAMTA genes and proteins are characterized in ol
ive. Olive (Olea europaea L.) is a Mediterranean
commercially important crop, and this is the first study on olive CAMTAs. 7 CAMTA genes are found in olive in total in this s
tudy.
Then, the cis
-actin regulatory elements in the promoter regions of these genes are analyzed. Stress and hormone response related
elements in the promoter regions are found, suggesting possible stress and hormone response roles of CAMTAs in olive. Also,

protein characteristics, conserved domains, and subcellular localizations are i
nvestigated. According to the results, all olive CAMTA
proteins are mainly localized in the nucleus as consistent with their roles, and all of them have 2 to 6 conserved domains wh
ich
are also found in other plant CAMTAs. Additionally, a phylogenetic tree
with 109 CAMTA proteins from well-knows plant species
is constructed, and this tree showed that olive CAMTA proteins are highly conserved in plant kingdom.